Welcome to methylGrapher’s documentation!

methylGrapher: Genome-Graph-Based DNA Methylation Analysis Using Whole Genome Bisulfite Sequencing

• Installation
  • Prerequisites
  • Install via PIP
  • Install via CONDA
  • Use Docker
  • Source code
• Process
  • Genome Indexing
  • Deduplication
  • Main
  • Align
  • MethylCall
  • ConversionRate
  • MergeCpG
• File Types
  • GFA: Graphical Fragment Assembly format
  • GAF: Graphical mApping Format
  • methyl: Graph methylation file
  • Reference:
• Toy Example
• Contact us
  • Source code and issue tracker
  • Citation